PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 470aa    MW: 53416.4 Da    PI: 4.6743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054161177117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  y+Cp+Cgk+++  + L+
  Lus10011554 161 YVCPNCGKRYNALDALQ 177
                  9**********999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134430.8767138IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SuperFamilySSF467853.54E-73797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005311.0E-5639209IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020022.1E-74099IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
Gene3DG3DSA:1.10.10.102.7E-54294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.101.3E-19147204IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577836.8E-9148200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MMSLEPWNRL VKLAARAFYD DYTTKGDNQP KIARSDNRGM AVVILDALTR RQWVREEDLA  60
KDLKMHTKQI RRTLRFFEEE KLVTRDQRKE TAKGAKQYSA AVAATTEIQN GKEGEDKVKL  120
LLHTYCCLDY AQIYDVVRYR LHRLKKKLRD ELEEKNTIQE YVCPNCGKRY NALDALQLVS  180
MVDEYFHCEN CNGELVAEND KLNVADGDTD DNTRRRRREK LKDLLQKMET QLKPLTEQLN  240
RVKDLQIPDF GNLLAWEARA IAAGRDLNGS SSNDPSKATQ GYGTPLPYLG ETKVEVAFSG  300
ADGKEEDIKP DNAGSGLKVL PPWMIKQGMN LTKEQRGEIK HESKMDGDSS SSAYSDDKKS  360
AVVDEKQSIQ DEYVKAYYAA ILKQQEELEA ARKQEELRVA PNLNAPPPES SPERQVGMKS  420
KREEDDEEDD DWEDGGGNGS SEGYRLNDLN EEAKATPEDE DDDIDWEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W2e-131029412244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT A
5fz5_W2e-131029412244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RLKKKLR
2214219RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8885027e-51HQ888502.1 Linum usitatissimum clone GMU2AYZ01AXRGQ microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074690.10.0PREDICTED: general transcription factor IIE subunit 1-like isoform X1
RefseqXP_012074691.10.0PREDICTED: general transcription factor IIE subunit 1-like isoform X1
TrEMBLA0A067KL600.0A0A067KL60_JATCU; Uncharacterized protein
STRINGVIT_11s0052g01850.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811